CRISPRone

CRISPRone report for GCA_000601055.1_ASM60105v1

♦ Seq 1: JHEF01000044.1 Bacteroides fragilis str. S23L17 gbfS23L17.contig.43, whole genome shotgun sequence

⇒Summary: seq-len = 98452 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 35094-38707 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 35094-35762 bp Gene: unk Type: unknown Location: 35765-36538 bp Gene: unk Type: unknown Location: 36546-37811 bp Gene: pfam13280:WYL Type: other Location: 37808-38707 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JHEF01000027.1 Bacteroides fragilis str. S23L17 gbfS23L17.contig.26, whole genome shotgun sequence

⇒Summary: seq-len = 82871 bp; # of CRISPR array = 1; # of cas gene = 10  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45533-60742 bp Zoom in on locus 1 x22 Gene: cls000004:cas6 Type: other Location: 45533-46264 bp Gene: unk Type: unknown Location: 46282-46908 bp Gene: unk Type: unknown Location: 46884-47663 bp Gene: cash17:cash17 Type: Type- Location: 47708-49135 bp Gene: unk Type: unknown Location: 49132-49611 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 49625-51034 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 51039-52841 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 52834-53973 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 53993-54832 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 54845-55255 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 55252-56202 bp Gene: cd09634:cas1 Type: universal Location: 56222-58492 bp Gene: cd09725:cas2 Type: universal Location: 58486-58776 bp CRISPR array Location: 59224-60742 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 59224-60742 bp Num of repeats: 22 Spacers: s1-s21 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 59224-60742 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JHEF01000061.1 Bacteroides fragilis str. S23L17 gbfS23L17.contig.60, whole genome shotgun sequence

⇒Summary: seq-len = 73765 bp; # of CRISPR array = 0; # of cas gene = 1  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 40296-40577 bp Zoom in on locus 1 Gene: pfam09827:cas2 Type: universal Location: 40296-40577 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: JHEF01000053.1 Bacteroides fragilis str. S23L17 gbfS23L17.contig.52, whole genome shotgun sequence

⇒Summary: seq-len = 101254 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1058-9013 bp Zoom in on locus 1 x15 CRISPR array Location: 1058-2178 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 1058-2178 bp Num of repeats: 15 Spacers: s1-s14 Gene: pfam09827:cas2 Type: Subtype-II-C Location: 2287-2619 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 2623-3555 bp Gene: unk Type: unknown Location: 3675-3983 bp Gene: unk Type: unknown Location: 4050-4574 bp Gene: cd09643:cas9 Type: Subtype-II-C Location: 4590-8900 bp antiRepeat Location: 8968-9013 bp Strand: - Match length: 26 bp Mismatch: 21 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1058-2178 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)