CRISPRone

CRISPRone report for GCA_000601075.2_ASM60107v2

♦ Seq 1: JGVE01000114.1 Bacteroides fragilis str. S6R8 gbfS6R8.contig.118, whole genome shotgun sequence

⇒Summary: seq-len = 85903 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 40836-44449 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 40836-41504 bp Gene: unk Type: unknown Location: 41507-42280 bp Gene: unk Type: unknown Location: 42288-43553 bp Gene: pfam13280:WYL Type: other Location: 43550-44449 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JGVE01000095.1 Bacteroides fragilis str. S6R8 gbfS6R8.contig.99, whole genome shotgun sequence

⇒Summary: seq-len = 559073 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 228909-229152 bp Zoom in on locus 1 x4 CRISPR array Location: 228909-229152 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 228909-229152 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 228909-229152 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JGVE01000101.1 Bacteroides fragilis str. S6R8 gbfS6R8.contig.105, whole genome shotgun sequence

⇒Summary: seq-len = 31446 bp; # of CRISPR array = 1; # of cas gene = 8  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3-8942 bp Zoom in on locus 1 x3 Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 3-578 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 583-2385 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 2378-3517 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 3537-4376 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 4389-4799 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 4796-5746 bp Gene: cd09634:cas1 Type: universal Location: 5766-8036 bp Gene: cd09725:cas2 Type: universal Location: 8030-8320 bp CRISPR array Location: 8768-8942 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 8768-8942 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 8768-8942 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)