CRISPRone

CRISPRone report for GCA_000601095.1_ASM60109v1

♦ Seq 1: JGVF01000057.1 Bacteroides fragilis str. 1007-1-F #6 gbf10071F6.contig.58, whole genome shotgun sequence

⇒Summary: seq-len = 351347 bp; # of CRISPR array = 0; # of cas gene = 2  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 30817-32529 bp Zoom in on locus 1 Gene: mkCas0179:cas2 Type: universal Location: 30817-31131 bp Gene: unk Type: unknown Location: 31131-31508 bp Gene: pfam00078:RT Type: other Location: 31489-32529 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JGVF01000066.1 Bacteroides fragilis str. 1007-1-F #6 gbf10071F6.contig.67, whole genome shotgun sequence

⇒Summary: seq-len = 193412 bp; # of CRISPR array = 1; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 152115-160902 bp Zoom in on locus 1 x15 CRISPR array Location: 152115-153041 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 152115-153041 bp Num of repeats: 15 Spacers: s1-s14 Gene: cd09725:cas2 Type: universal Location: 153254-153517 bp Gene: cd09722:cas1 Type: universal Location: 153520-154533 bp Gene: pfam01930:cas4 Type: Type-I Location: 154530-155087 bp Gene: mkCas0088:cas7 Type: Subtype-I-B Location: 155107-156165 bp Gene: mkCas0111:cas8b6 Type: Subtype-I-B Location: 156178-157503 bp Gene: COG1203:cas3 Type: Type-I Location: 157507-159666 bp Gene: mkCas0069:cas5 Type: Subtype-I-B Location: 159656-160219 bp Gene: cd09652:cas6 Type: other Location: 160231-160902 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 152115-153041 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JGVF01000063.1 Bacteroides fragilis str. 1007-1-F #6 gbf10071F6.contig.64, whole genome shotgun sequence

⇒Summary: seq-len = 187632 bp; # of CRISPR array = 1; # of cas gene = 10  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 28166-42880 bp Zoom in on locus 1 x16 Gene: cls000004:cas6 Type: other Location: 28166-28834 bp Gene: unk Type: unknown Location: 28852-29478 bp Gene: unk Type: unknown Location: 29454-30233 bp Gene: cash17:cash17 Type: Type- Location: 30278-31705 bp Gene: unk Type: unknown Location: 31702-32181 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 32195-33604 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 33609-35411 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 35404-36543 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 36563-37402 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 37415-37825 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 37828-38772 bp Gene: cd09634:cas1 Type: universal Location: 38792-41062 bp Gene: cd09725:cas2 Type: universal Location: 41056-41346 bp CRISPR array Location: 41794-42880 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 41794-42880 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 41794-42880 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: JGVF01000072.1 Bacteroides fragilis str. 1007-1-F #6 gbf10071F6.contig.73, whole genome shotgun sequence

⇒Summary: seq-len = 269317 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 120618-124231 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 120618-121286 bp Gene: unk Type: unknown Location: 121289-122062 bp Gene: unk Type: unknown Location: 122070-123335 bp Gene: pfam13280:WYL Type: other Location: 123332-124231 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)