CRISPRone

CRISPRone report for GCA_000615485.1_ASM61548v1

♦ Seq 1: BAMA01000643.1 Pseudomonas aeruginosa JCM 5962 DNA, contig: JCM5962.contig00643, whole genome shotgun sequence

⇒Summary: seq-len = 2457 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 198-1005 bp Zoom in on locus 1 x14 CRISPR array Location: 198-1005 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 198-1005 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 198-1005 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BAMA01000083.1 Pseudomonas aeruginosa JCM 5962 DNA, contig: JCM5962.contig00083, whole genome shotgun sequence

⇒Summary: seq-len = 13885 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3190-13688 bp Zoom in on locus 1 x17 x16 CRISPR array Location: 3190-4179 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 3190-4179 bp Num of repeats: 17 Spacers: s1-s16 Gene: cd09739:cas6f Type: other Location: 4361-4924 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 4928-5956 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 5967-6950 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 6937-8241 bp Gene: COG1203:cas3 Type: Type-I Location: 8299-11529 bp Gene: COG1518:cas1 Type: universal Location: 11693-12499 bp CRISPR array Location: 12761-13688 bp Num of repeats: 16 Spacers: s17-s31 CRISPR array Location: 12761-13688 bp Num of repeats: 16 Spacers: s17-s31 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 3190-4179 bp]: array | spacers
           [Locus range 12761-13688 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)