CRISPRone

CRISPRone report for GCA_000629105.1_Pseu_aeru_BWH031_V1

♦ Seq 1: KK212238.1 Pseudomonas aeruginosa BWH031 genomic scaffold adTxV-supercont1.23, whole genome shotgun sequence

⇒Summary: seq-len = 96603 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 15907-24647 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 15907-16776 bp Gene: unk Type: unknown Location: 17117-17329 bp Gene: unk Type: unknown Location: 17435-19573 bp Gene: cls000038:cas7 Type: Subtype-I-B Location: 19570-21354 bp Gene: cd09639:cas3 Type: Type-I Location: 22281-24647 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: KK212255.1 Pseudomonas aeruginosa BWH031 genomic scaffold adTxV-supercont1.40, whole genome shotgun sequence

⇒Summary: seq-len = 48863 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38495-48553 bp Zoom in on locus 1 x10 x10 CRISPR array Location: 38495-39062 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 38495-39062 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09739:cas6f Type: other Location: 39245-39808 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39812-40840 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40851-41834 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41821-43122 bp Gene: COG1203:cas3 Type: Type-I Location: 43533-46763 bp Gene: cd09718:cas1 Type: universal Location: 46760-47734 bp CRISPR array Location: 47986-48553 bp Num of repeats: 10 Spacers: s10-s18 CRISPR array Location: 47986-48553 bp Num of repeats: 10 Spacers: s10-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38495-39062 bp]: array | spacers
           [Locus range 47986-48553 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: KK212234.1 Pseudomonas aeruginosa BWH031 genomic scaffold adTxV-supercont1.19, whole genome shotgun sequence

⇒Summary: seq-len = 112617 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 600-1169 bp Zoom in on locus 1 x10 CRISPR array Location: 600-1169 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 600-1169 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 600-1169 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)