CRISPRone

CRISPRone report for GCA_000629145.1_Pseu_aeru_BWH029_V1

♦ Seq 1: KK212373.1 Pseudomonas aeruginosa BWH029 genomic scaffold adTxJ-supercont1.25, whole genome shotgun sequence

⇒Summary: seq-len = 62304 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 52813-62293 bp Zoom in on locus 1 x10 x6 CRISPR array Location: 52813-53381 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 52813-53381 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09739:cas6f Type: other Location: 53565-54128 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 54132-55160 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 55171-56154 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 56141-57445 bp Gene: COG1203:cas3 Type: Type-I Location: 57503-60733 bp Gene: cd09718:cas1 Type: universal Location: 60730-61704 bp CRISPR array Location: 61966-62293 bp Num of repeats: 6 Spacers: s10-s14 CRISPR array Location: 61966-62293 bp Num of repeats: 6 Spacers: s10-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 52813-53381 bp]: array | spacers
           [Locus range 61966-62293 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: KK212363.1 Pseudomonas aeruginosa BWH029 genomic scaffold adTxJ-supercont1.15, whole genome shotgun sequence

⇒Summary: seq-len = 130739 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2-150 bp Zoom in on locus 1 x3 CRISPR array Location: 2-150 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 2-150 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2-150 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)