CRISPRone

CRISPRone report for GCA_000629165.1_Pseu_aeru_3581_V1

♦ Seq 1: KK212410.1 Pseudomonas aeruginosa 3581 genomic scaffold adTwT-supercont1.12, whole genome shotgun sequence

⇒Summary: seq-len = 200099 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 199944-200094 bp Zoom in on locus 1 x3 CRISPR array Location: 199944-200094 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 199944-200094 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 199944-200094 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: KK212451.1 Pseudomonas aeruginosa 3581 genomic scaffold adTwT-supercont1.53, whole genome shotgun sequence

⇒Summary: seq-len = 9555 bp; # of CRISPR array = 1; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 113-9554 bp Zoom in on locus 1 x5 Gene: pfam09707:cas2 Type: universal Location: 113-412 bp Gene: cd09719:cas1 Type: universal Location: 409-1299 bp Gene: pfam08798:cas6e Type: other Location: 1326-1865 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 1912-2574 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 2576-3718 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 3728-4258 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 4255-5823 bp Gene: cd09641:cas3HD Type: Type-I Location: 5826-8507 bp CRISPR array Location: 9281-9554 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 9281-9554 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 9281-9554 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)