CRISPRone

CRISPRone report for GCA_000629185.1_Pseu_aeru_3580_V1

♦ Seq 1: KK212487.1 Pseudomonas aeruginosa 3580 genomic scaffold adTxz-supercont1.12, whole genome shotgun sequence

⇒Summary: seq-len = 208731 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 74312-84897 bp Zoom in on locus 1 Gene: COG0640:csa3 Type: Subtype-I-A Location: 74312-75181 bp Gene: pfam00078:RT Type: other Location: 80090-81358 bp Gene: unk Type: unknown Location: 81508-81906 bp Gene: unk Type: unknown Location: 82090-82269 bp Gene: cls000170:cas4 Type: Type-I Location: 83353-84897 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: KK212489.1 Pseudomonas aeruginosa 3580 genomic scaffold adTxz-supercont1.14, whole genome shotgun sequence

⇒Summary: seq-len = 200813 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 200658-200808 bp Zoom in on locus 1 x3 CRISPR array Location: 200658-200808 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 200658-200808 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 200658-200808 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: KK212481.1 Pseudomonas aeruginosa 3580 genomic scaffold adTxz-supercont1.6, whole genome shotgun sequence

⇒Summary: seq-len = 292444 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3-92 bp Zoom in on locus 1 x2 CRISPR array Location: 3-92 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 3-92 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3-92 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: KK212521.1 Pseudomonas aeruginosa 3580 genomic scaffold adTxz-supercont1.46, whole genome shotgun sequence

⇒Summary: seq-len = 9662 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6-9662 bp Zoom in on locus 1 x4 x4 CRISPR array Location: 6-218 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 6-218 bp Num of repeats: 4 Spacers: s1-s3 Gene: pfam09707:cas2 Type: universal Location: 283-582 bp Gene: cd09719:cas1 Type: universal Location: 579-1469 bp Gene: pfam08798:cas6e Type: other Location: 1496-2035 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 2082-2744 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 2746-3888 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 3898-4428 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 4425-5993 bp Gene: cd09641:cas3HD Type: Type-I Location: 5996-8677 bp CRISPR array Location: 9451-9662 bp Num of repeats: 4 Spacers: s4-s6 CRISPR array Location: 9451-9662 bp Num of repeats: 4 Spacers: s4-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 6-218 bp]: array | spacers
           [Locus range 9451-9662 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)