CRISPRone

CRISPRone report for GCA_000629325.1_Pseu_aeru_3573_V1

♦ Seq 1: KK213088.1 Pseudomonas aeruginosa 3573 genomic scaffold adTvP-supercont1.9, whole genome shotgun sequence

⇒Summary: seq-len = 274302 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 274085-274296 bp Zoom in on locus 1 x4 CRISPR array Location: 274085-274296 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 274085-274296 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 274085-274296 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: KK213120.1 Pseudomonas aeruginosa 3573 genomic scaffold adTvP-supercont1.41, whole genome shotgun sequence

⇒Summary: seq-len = 21664 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7-154 bp Zoom in on locus 1 x3 CRISPR array Location: 7-154 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 7-154 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 7-154 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: KK213125.1 Pseudomonas aeruginosa 3573 genomic scaffold adTvP-supercont1.46, whole genome shotgun sequence

⇒Summary: seq-len = 9064 bp; # of CRISPR array = 1; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-8771 bp Zoom in on locus 1 x8 CRISPR array Location: 1-449 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 1-449 bp Num of repeats: 8 Spacers: s1-s7 Gene: cd09739:cas6f Type: other Location: 632-1195 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 1199-2227 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 2238-3221 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 3208-4512 bp Gene: COG1203:cas3 Type: Type-I Location: 4570-7800 bp Gene: cd09718:cas1 Type: universal Location: 7797-8771 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1-449 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: KK213115.1 Pseudomonas aeruginosa 3573 genomic scaffold adTvP-supercont1.36, whole genome shotgun sequence

⇒Summary: seq-len = 38354 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38081-38349 bp Zoom in on locus 1 x5 CRISPR array Location: 38081-38349 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 38081-38349 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 38081-38349 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: KK213082.1 Pseudomonas aeruginosa 3573 genomic scaffold adTvP-supercont1.3, whole genome shotgun sequence

⇒Summary: seq-len = 454710 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7-96 bp Zoom in on locus 1 x2 CRISPR array Location: 7-96 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 7-96 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 7-96 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: KK213126.1 Pseudomonas aeruginosa 3573 genomic scaffold adTvP-supercont1.47, whole genome shotgun sequence

⇒Summary: seq-len = 8771 bp; # of CRISPR array = 0; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 863-8678 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 863-3544 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 3547-5115 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 5112-5642 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 5652-6794 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 6796-7458 bp Gene: pfam08798:cas6e Type: other Location: 7433-8044 bp Gene: cd09719:cas1 Type: universal Location: 8071-8382 bp Gene: pfam09707:cas2 Type: universal Location: 8379-8678 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)