CRISPRone

CRISPRone report for GCA_000629405.1_Pseu_aeru_BWH059_V1

♦ Seq 1: KK213173.1 Pseudomonas aeruginosa BWH059 genomic scaffold adTvw-supercont1.1, whole genome shotgun sequence

⇒Summary: seq-len = 4217286 bp; # of CRISPR array = 2; # of cas gene = 11  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 417526-428111 bp 2 Locus 2: 3617966-3628477 bp Zoom in on locus 1 Zoom in on locus 2 x13 x9 Gene: COG0640:csa3 Type: Subtype-I-A Location: 417526-418395 bp Gene: pfam00078:RT Type: other Location: 423304-424572 bp Gene: unk Type: unknown Location: 424722-425120 bp Gene: unk Type: unknown Location: 425304-425483 bp Gene: cls000170:cas4 Type: Type-I Location: 426567-428111 bp CRISPR array Location: 3617966-3618727 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 3617966-3618727 bp Num of repeats: 13 Spacers: s1-s12 Gene: pfam09707:cas2 Type: universal Location: 3618792-3619091 bp Gene: cd09719:cas1 Type: universal Location: 3619088-3619978 bp Gene: pfam08798:cas6e Type: other Location: 3620005-3620544 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 3620591-3621253 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 3621255-3622397 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 3622407-3622937 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 3622934-3624502 bp Gene: cd09641:cas3HD Type: Type-I Location: 3624505-3627186 bp CRISPR array Location: 3627960-3628477 bp Num of repeats: 9 Spacers: s13-s20 CRISPR array Location: 3627960-3628477 bp Num of repeats: 9 Spacers: s13-s20 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 3617966-3618727 bp]: array | spacers
           [Locus range 3627960-3628477 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)