CRISPRone

CRISPRone report for GCA_000647635.1_PseAerIGB83_1.0

♦ Seq 1: ATAH01000101.1 Pseudomonas aeruginosa IGB83 contig_19, whole genome shotgun sequence

⇒Summary: seq-len = 10851 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37-9696 bp Zoom in on locus 1 x2 x4 CRISPR array Location: 37-127 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 37-127 bp Num of repeats: 2 Spacers: s1-s1 Gene: cd09641:cas3HD Type: Type-I Location: 1025-3706 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 3709-5277 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 5274-5804 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 5814-6956 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 6958-7620 bp Gene: pfam08798:cas6e Type: other Location: 7595-8206 bp Gene: cd09719:cas1 Type: universal Location: 8233-9123 bp Gene: pfam09707:cas2 Type: universal Location: 9120-9419 bp CRISPR array Location: 9484-9696 bp Num of repeats: 4 Spacers: s2-s4 CRISPR array Location: 9484-9696 bp Num of repeats: 4 Spacers: s2-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 37-127 bp]: array | spacers
           [Locus range 9484-9696 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)