CRISPRone

CRISPRone report for GCA_000698765.1_PUPa3_1.0

♦ Seq 1: JJOD01000138.1 Pseudomonas aeruginosa strain PUPa3 contig83.7, whole genome shotgun sequence

⇒Summary: seq-len = 76548 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 28818-39077 bp Zoom in on locus 1 x13 x16 CRISPR array Location: 28818-29566 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 28818-29566 bp Num of repeats: 13 Spacers: s1-s12 Gene: cd09718:cas1 Type: universal Location: 29826-30800 bp Gene: COG1203:cas3 Type: Type-I Location: 30797-34027 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 34085-35389 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 35376-36359 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 36370-37398 bp Gene: cd09739:cas6f Type: other Location: 37402-37965 bp CRISPR array Location: 38149-39077 bp Num of repeats: 16 Spacers: s13-s27 CRISPR array Location: 38149-39077 bp Num of repeats: 16 Spacers: s13-s27 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 28818-29566 bp]: array | spacers
           [Locus range 38149-39077 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JJOD01000041.1 Pseudomonas aeruginosa strain PUPa3 contig25.2, whole genome shotgun sequence

⇒Summary: seq-len = 238729 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 130859-131966 bp Zoom in on locus 1 x19 CRISPR array Location: 130859-131966 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 130859-131966 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 130859-131966 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)