CRISPRone

CRISPRone report for GCA_000705235.1_Pseudomonas

♦ Seq 1: JHEU01000719.1 Pseudomonas aeruginosa strain KIB contig00719, whole genome shotgun sequence

⇒Summary: seq-len = 2592 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 9-456 bp Zoom in on locus 1 x8 CRISPR array Location: 9-456 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 9-456 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 9-456 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JHEU01000043.1 Pseudomonas aeruginosa strain KIB contig00043, whole genome shotgun sequence

⇒Summary: seq-len = 12614 bp; # of CRISPR array = 1; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3204-12505 bp Zoom in on locus 1 x16 CRISPR array Location: 3204-4132 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 3204-4132 bp Num of repeats: 16 Spacers: s1-s15 Gene: cd09739:cas6f Type: other Location: 4381-4944 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 4948-5976 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 5987-6970 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 6957-8261 bp Gene: cd09673:cas3f Type: Subtype-I-F Location: 8319-8729 bp Gene: COG1203:cas3 Type: Type-I Location: 8729-10699 bp Gene: cd09673:cas3f Type: Subtype-I-F Location: 10650-11549 bp Gene: cd09718:cas1 Type: universal Location: 11546-12505 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 3204-4132 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)