CRISPRone

CRISPRone report for GCA_000709285.1_ASM70928v1

♦ Seq 1: JMQH01000009.1 Pseudomonas aeruginosa strain JMM contig009, whole genome shotgun sequence

⇒Summary: seq-len = 48307 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37225-47425 bp Zoom in on locus 1 x8 x20 CRISPR array Location: 37225-37673 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 37225-37673 bp Num of repeats: 8 Spacers: s1-s7 Gene: cd09739:cas6f Type: other Location: 37856-38419 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 38423-39451 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 39462-40445 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 40432-41736 bp Gene: COG1203:cas3 Type: Type-I Location: 41794-45024 bp Gene: cd09718:cas1 Type: universal Location: 45021-45995 bp CRISPR array Location: 46256-47425 bp Num of repeats: 20 Spacers: s8-s26 CRISPR array Location: 46256-47425 bp Num of repeats: 20 Spacers: s8-s26 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 37225-37673 bp]: array | spacers
           [Locus range 46256-47425 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JMQH01000025.1 Pseudomonas aeruginosa strain JMM contig025, whole genome shotgun sequence

⇒Summary: seq-len = 413180 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 411191-412298 bp Zoom in on locus 1 x19 CRISPR array Location: 411191-412298 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 411191-412298 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 411191-412298 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)