CRISPRone

CRISPRone report for GCA_000724795.2_ASM72479v2

♦ Seq 1: CP036550.1 Bacteroides fragilis strain DCMOUH0042B chromosome, complete genome

⇒Summary: seq-len = 5141257 bp; # of CRISPR array = 2; # of cas gene = 15  (type I, II, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 357366-364554 bp 2 Locus 2: 3674118-3689114 bp 3 Locus 3: 4853912-4857525 bp Zoom in on locus 1 x5 Zoom in on locus 2 x20 Zoom in on locus 3 CRISPR array Location: 357366-357719 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 357366-357719 bp Num of repeats: 5 Spacers: s1-s4 Gene: pfam09827:cas2 Type: Subtype-II-C Location: 357828-358160 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 358164-359096 bp Gene: unk Type: unknown Location: 359216-359524 bp Gene: unk Type: unknown Location: 359591-360115 bp Gene: cd09643:cas9 Type: Subtype-II-C Location: 360131-364441 bp antiRepeat Location: 364509-364554 bp Strand: - Match length: 26 bp Mismatch: 21 bp Gene: cls000004:cas6 Type: other Location: 3674118-3674786 bp Gene: unk Type: unknown Location: 3674804-3675430 bp Gene: unk Type: unknown Location: 3675406-3676185 bp Gene: cash17:cash17 Type: Type- Location: 3676230-3677657 bp Gene: unk Type: unknown Location: 3677654-3678133 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 3678147-3679556 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 3679561-3681363 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 3681356-3682495 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 3682515-3683354 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 3683367-3683777 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 3683780-3684724 bp Gene: cd09634:cas1 Type: universal Location: 3684744-3687014 bp Gene: cd09725:cas2 Type: universal Location: 3687008-3687298 bp CRISPR array Location: 3687746-3689114 bp Num of repeats: 20 Spacers: s5-s23 CRISPR array Location: 3687746-3689114 bp Num of repeats: 20 Spacers: s5-s23 Gene: cd09692:cas5 Type: Subtype-I-B Location: 4853912-4854580 bp Gene: unk Type: unknown Location: 4854583-4855356 bp Gene: unk Type: unknown Location: 4855364-4856629 bp Gene: pfam13280:WYL Type: other Location: 4856626-4857525 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 357366-357719 bp]: array | spacers
           [Locus range 3687746-3689114 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)