CRISPRone

CRISPRone report for GCA_000751715.1_HGAP_corrected

♦ Seq 1: CCVU01000001.1 Pseudomonas aeruginosa genome assembly HGAP_corrected, contig unitig_0, whole genome shotgun sequence

⇒Summary: seq-len = 5967688 bp; # of CRISPR array = 2; # of cas gene = 11  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2352964-2363476 bp 2 Locus 2: 5888172-5898757 bp Zoom in on locus 1 x9 x13 Zoom in on locus 2 CRISPR array Location: 2352964-2353482 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 2352964-2353482 bp Num of repeats: 9 Spacers: s1-s8 Gene: cd09641:cas3HD Type: Type-I Location: 2354255-2356936 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 2356939-2358507 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 2358504-2359034 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 2359044-2360186 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 2360188-2360850 bp Gene: pfam08798:cas6e Type: other Location: 2360825-2361436 bp Gene: cd09719:cas1 Type: universal Location: 2361463-2362353 bp Gene: pfam09707:cas2 Type: universal Location: 2362350-2362649 bp CRISPR array Location: 2362714-2363476 bp Num of repeats: 13 Spacers: s9-s20 CRISPR array Location: 2362714-2363476 bp Num of repeats: 13 Spacers: s9-s20 Gene: COG0640:csa3 Type: Subtype-I-A Location: 5888172-5889041 bp Gene: pfam00078:RT Type: other Location: 5893950-5895218 bp Gene: unk Type: unknown Location: 5895368-5895766 bp Gene: unk Type: unknown Location: 5895950-5896129 bp Gene: cls000170:cas4 Type: Type-I Location: 5897213-5898757 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 2352964-2353482 bp]: array | spacers
           [Locus range 2362714-2363476 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)