CRISPRone

CRISPRone report for GCA_000760505.2_ASM76050v2

♦ Seq 1: JMBR02000051.1 Pseudomonas aeruginosa strain P2-L230/95 contig51, whole genome shotgun sequence

⇒Summary: seq-len = 30812 bp; # of CRISPR array = 3; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 14403-25159 bp Zoom in on locus 1 x12 x2 x11 CRISPR array Location: 14403-15102 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 14403-15102 bp Num of repeats: 12 Spacers: s1-s11 Gene: pfam09707:cas2 Type: universal Location: 15167-15466 bp Gene: cd09719:cas1 Type: universal Location: 15463-16353 bp Gene: pfam08798:cas6e Type: other Location: 16380-16919 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 16966-17628 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 17630-18772 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 18782-19312 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 19309-20877 bp Gene: cd09641:cas3HD Type: Type-I Location: 20880-23561 bp CRISPR array Location: 24336-24425 bp Num of repeats: 2 Spacers: s12-s12 CRISPR array Location: 24336-24425 bp Num of repeats: 2 Spacers: s12-s12 CRISPR array Location: 24520-25159 bp Num of repeats: 11 Spacers: s13-s22 CRISPR array Location: 24520-25159 bp Num of repeats: 11 Spacers: s13-s22 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 14403-15102 bp]: array | spacers
           [Locus range 24336-24425 bp]: array | spacers
           [Locus range 24520-25159 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JMBR02000020.1 Pseudomonas aeruginosa strain P2-L230/95 contig20, whole genome shotgun sequence

⇒Summary: seq-len = 41633 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 27619-39490 bp Zoom in on locus 1 x31 x19 CRISPR array Location: 27619-29448 bp Num of repeats: 31 Spacers: s1-s30 CRISPR array Location: 27619-29448 bp Num of repeats: 31 Spacers: s1-s30 Gene: cd09718:cas1 Type: universal Location: 29708-30682 bp Gene: COG1203:cas3 Type: Type-I Location: 30679-33909 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 34320-35621 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 35608-36591 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 36602-37630 bp Gene: cd09739:cas6f Type: other Location: 37634-38197 bp CRISPR array Location: 38382-39490 bp Num of repeats: 19 Spacers: s31-s48 CRISPR array Location: 38382-39490 bp Num of repeats: 19 Spacers: s31-s48 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 27619-29448 bp]: array | spacers
           [Locus range 38382-39490 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)