CRISPRone

CRISPRone report for GCA_000783275.1_ASM78327v1

♦ Seq 1: JRAU01000227.1 Pseudomonas aeruginosa strain PDR Scaffold133_1, whole genome shotgun sequence

⇒Summary: seq-len = 4913 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 241-1169 bp Zoom in on locus 1 x16 CRISPR array Location: 241-1169 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 241-1169 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 241-1169 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: KN360857.1 Pseudomonas aeruginosa strain PDR genomic scaffold Scaffold14, whole genome shotgun sequence

⇒Summary: seq-len = 118242 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5227-12015 bp Zoom in on locus 1 Gene: cd09696:cas3 Type: Subtype-I-U Location: 5227-8448 bp Gene: pfam13280:WYL Type: other Location: 8461-9369 bp Gene: unk Type: unknown Location: 9649-10539 bp Gene: unk Type: unknown Location: 10674-10991 bp Gene: mkCas0115:csx3 Type: other Location: 10984-12015 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: KN360859.1 Pseudomonas aeruginosa strain PDR genomic scaffold Scaffold16, whole genome shotgun sequence

⇒Summary: seq-len = 112002 bp; # of CRISPR array = 0; # of cas gene = 3  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 90511-97633 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 90511-91383 bp Gene: pfam13280:WYL Type: other Location: 91618-92664 bp Gene: pfam13280:WYL Type: other Location: 96638-97633 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: KN360883.1 Pseudomonas aeruginosa strain PDR genomic scaffold Scaffold58, whole genome shotgun sequence

⇒Summary: seq-len = 40526 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 30315-40517 bp Zoom in on locus 1 x17 x11 CRISPR array Location: 30315-31303 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 30315-31303 bp Num of repeats: 17 Spacers: s1-s16 Gene: cd09739:cas6f Type: other Location: 31486-32049 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 32053-33081 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 33092-34075 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 34062-35366 bp Gene: COG1203:cas3 Type: Type-I Location: 35424-38654 bp Gene: cd09718:cas1 Type: universal Location: 38651-39625 bp CRISPR array Location: 39890-40517 bp Num of repeats: 11 Spacers: s17-s26 CRISPR array Location: 39890-40517 bp Num of repeats: 11 Spacers: s17-s26 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 30315-31303 bp]: array | spacers
           [Locus range 39890-40517 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)