CRISPRone

CRISPRone report for GCA_000789555.1_AZPAE14840

♦ Seq 1: JTUU01000024.1 Pseudomonas aeruginosa strain AZPAE14840 AZPAE14840_contig_25, whole genome shotgun sequence

⇒Summary: seq-len = 67334 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4043-14242 bp Zoom in on locus 1 x16 x12 CRISPR array Location: 4043-4971 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 4043-4971 bp Num of repeats: 16 Spacers: s1-s15 Gene: cd09718:cas1 Type: universal Location: 5231-6205 bp Gene: COG1203:cas3 Type: Type-I Location: 6202-9432 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 9490-10794 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 10781-11764 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 11775-12803 bp Gene: cd09739:cas6f Type: other Location: 12807-13370 bp CRISPR array Location: 13554-14242 bp Num of repeats: 12 Spacers: s16-s26 CRISPR array Location: 13554-14242 bp Num of repeats: 12 Spacers: s16-s26 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 4043-4971 bp]: array | spacers
           [Locus range 13554-14242 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JTUU01000064.1 Pseudomonas aeruginosa strain AZPAE14840 AZPAE14840_contig_65, whole genome shotgun sequence

⇒Summary: seq-len = 1598 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-1049 bp Zoom in on locus 1 x18 CRISPR array Location: 1-1049 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 1-1049 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1-1049 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)