CRISPRone

CRISPRone report for GCA_000789645.1_AZPAE15036

♦ Seq 1: JTNK01000030.1 Pseudomonas aeruginosa strain AZPAE15036 AZPAE15036_contig_30, whole genome shotgun sequence

⇒Summary: seq-len = 111940 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 238-1047 bp Zoom in on locus 1 x14 CRISPR array Location: 238-1047 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 238-1047 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 238-1047 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JTNK01000003.1 Pseudomonas aeruginosa strain AZPAE15036 AZPAE15036_contig_3, whole genome shotgun sequence

⇒Summary: seq-len = 61723 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 236-9245 bp Zoom in on locus 1 x2 x6 CRISPR array Location: 236-324 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 236-324 bp Num of repeats: 2 Spacers: s1-s1 Gene: cd09718:cas1 Type: universal Location: 584-1558 bp Gene: COG1203:cas3 Type: Type-I Location: 1555-4785 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 4853-6157 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 6144-7127 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 7138-8166 bp Gene: cd09739:cas6f Type: other Location: 8170-8733 bp CRISPR array Location: 8918-9245 bp Num of repeats: 6 Spacers: s2-s6 CRISPR array Location: 8918-9245 bp Num of repeats: 6 Spacers: s2-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 236-324 bp]: array | spacers
           [Locus range 8918-9245 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)