CRISPRone

CRISPRone report for GCA_000789755.1_AZPAE14847

♦ Seq 1: JTUN01000039.1 Pseudomonas aeruginosa strain AZPAE14847 AZPAE14847_contig_39, whole genome shotgun sequence

⇒Summary: seq-len = 68833 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37637-48547 bp Zoom in on locus 1 x23 x17 CRISPR array Location: 37637-38986 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 37637-38986 bp Num of repeats: 23 Spacers: s1-s22 Gene: cd09739:cas6f Type: other Location: 39169-39732 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39736-40764 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40775-41758 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41745-43049 bp Gene: COG1203:cas3 Type: Type-I Location: 43107-46337 bp Gene: cd09718:cas1 Type: universal Location: 46334-47308 bp CRISPR array Location: 47560-48547 bp Num of repeats: 17 Spacers: s23-s38 CRISPR array Location: 47560-48547 bp Num of repeats: 17 Spacers: s23-s38 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 37637-38986 bp]: array | spacers
           [Locus range 47560-48547 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JTUN01000008.1 Pseudomonas aeruginosa strain AZPAE14847 AZPAE14847_contig_8, whole genome shotgun sequence

⇒Summary: seq-len = 449827 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 260994-271065 bp Zoom in on locus 1 Gene: cd09696:cas3 Type: Subtype-I-U Location: 260994-264173 bp Gene: unk Type: unknown Location: 264538-265872 bp Gene: pfam13280:WYL Type: other Location: 266001-266876 bp Gene: unk Type: unknown Location: 267014-267676 bp Gene: cd09639:cas3 Type: Type-I Location: 267940-271065 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)