CRISPRone

CRISPRone report for GCA_000789835.1_AZPAE14851

♦ Seq 1: JTUK01000041.1 Pseudomonas aeruginosa strain AZPAE14851 AZPAE14851_contig_41, whole genome shotgun sequence

⇒Summary: seq-len = 78625 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 24339-34924 bp Zoom in on locus 1 Gene: cls000170:cas4 Type: Type-I Location: 24339-25883 bp Gene: unk Type: unknown Location: 26967-27146 bp Gene: unk Type: unknown Location: 27330-27728 bp Gene: pfam00078:RT Type: other Location: 27878-29146 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 34055-34924 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JTUK01000023.1 Pseudomonas aeruginosa strain AZPAE14851 AZPAE14851_contig_23, whole genome shotgun sequence

⇒Summary: seq-len = 111916 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 87510-98083 bp Zoom in on locus 1 x9 x14 CRISPR array Location: 87510-88028 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 87510-88028 bp Num of repeats: 9 Spacers: s1-s8 Gene: cd09641:cas3HD Type: Type-I Location: 88801-91482 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 91485-93053 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 93050-93580 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 93590-94732 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 94734-95396 bp Gene: pfam08798:cas6e Type: other Location: 95371-95982 bp Gene: cd09719:cas1 Type: universal Location: 96009-96899 bp Gene: pfam09707:cas2 Type: universal Location: 96896-97195 bp CRISPR array Location: 97260-98083 bp Num of repeats: 14 Spacers: s9-s21 CRISPR array Location: 97260-98083 bp Num of repeats: 14 Spacers: s9-s21 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 87510-88028 bp]: array | spacers
           [Locus range 97260-98083 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)