CRISPRone

CRISPRone report for GCA_000789965.1_AZPAE14856

♦ Seq 1: JTUG01000013.1 Pseudomonas aeruginosa strain AZPAE14856 AZPAE14856_contig_13, whole genome shotgun sequence

⇒Summary: seq-len = 186007 bp; # of CRISPR array = 3; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 136789-147861 bp Zoom in on locus 1 x2 x21 x17 CRISPR array Location: 136789-136877 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 136789-136877 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 137061-138290 bp Num of repeats: 21 Spacers: s2-s21 CRISPR array Location: 137061-138290 bp Num of repeats: 21 Spacers: s2-s21 Gene: cd09718:cas1 Type: universal Location: 138550-139524 bp Gene: COG1203:cas3 Type: Type-I Location: 139521-142751 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 142809-144113 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 144100-145083 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 145094-146122 bp Gene: cd09739:cas6f Type: other Location: 146126-146689 bp CRISPR array Location: 146874-147861 bp Num of repeats: 17 Spacers: s22-s37 CRISPR array Location: 146874-147861 bp Num of repeats: 17 Spacers: s22-s37 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 136789-136877 bp]: array | spacers
           [Locus range 137061-138290 bp]: array | spacers
           [Locus range 146874-147861 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JTUG01000017.1 Pseudomonas aeruginosa strain AZPAE14856 AZPAE14856_contig_17, whole genome shotgun sequence

⇒Summary: seq-len = 255208 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 62310-62758 bp Zoom in on locus 1 x8 CRISPR array Location: 62310-62758 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 62310-62758 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 62310-62758 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)