CRISPRone

CRISPRone report for GCA_000789975.1_AZPAE14910

♦ Seq 1: JTSF01000009.1 Pseudomonas aeruginosa strain AZPAE14910 AZPAE14910_contig_9, whole genome shotgun sequence

⇒Summary: seq-len = 462058 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 62672-63659 bp Zoom in on locus 1 x17 CRISPR array Location: 62672-63659 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 62672-63659 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 62672-63659 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JTSF01000031.1 Pseudomonas aeruginosa strain AZPAE14910 AZPAE14910_contig_31, whole genome shotgun sequence

⇒Summary: seq-len = 48702 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37395-47594 bp Zoom in on locus 1 x15 x13 CRISPR array Location: 37395-38264 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 37395-38264 bp Num of repeats: 15 Spacers: s1-s14 Gene: cd09739:cas6f Type: other Location: 38447-39010 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39014-40042 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40053-41036 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41023-42327 bp Gene: COG1203:cas3 Type: Type-I Location: 42385-45615 bp Gene: cd09718:cas1 Type: universal Location: 45612-46586 bp CRISPR array Location: 46847-47594 bp Num of repeats: 13 Spacers: s15-s26 CRISPR array Location: 46847-47594 bp Num of repeats: 13 Spacers: s15-s26 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 37395-38264 bp]: array | spacers
           [Locus range 46847-47594 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)