CRISPRone

CRISPRone report for GCA_000790105.1_AZPAE14862

♦ Seq 1: JTUA01000098.1 Pseudomonas aeruginosa strain AZPAE14862 AZPAE14862_contig_98, whole genome shotgun sequence

⇒Summary: seq-len = 11698 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1070-11519 bp Zoom in on locus 1 x23 x8 CRISPR array Location: 1070-2422 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 1070-2422 bp Num of repeats: 23 Spacers: s1-s22 Gene: cd09718:cas1 Type: universal Location: 2682-3656 bp Gene: COG1203:cas3 Type: Type-I Location: 3653-6883 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 6941-8245 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 8232-9215 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 9226-10254 bp Gene: cd09739:cas6f Type: other Location: 10258-10821 bp CRISPR array Location: 11071-11519 bp Num of repeats: 8 Spacers: s23-s29 CRISPR array Location: 11071-11519 bp Num of repeats: 8 Spacers: s23-s29 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1070-2422 bp]: array | spacers
           [Locus range 11071-11519 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JTUA01000030.1 Pseudomonas aeruginosa strain AZPAE14862 AZPAE14862_contig_30, whole genome shotgun sequence

⇒Summary: seq-len = 133844 bp; # of CRISPR array = 0; # of cas gene = 5  (type I, II, IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 44765-59331 bp Zoom in on locus 1 Gene: cd12217:csn2 Type: Subtype-II-A Location: 44765-46645 bp Gene: COG1199:DinG Type: Subtype-IV-A Location: 46702-49707 bp Gene: unk Type: unknown Location: 49719-51719 bp Gene: unk Type: unknown Location: 51731-52534 bp Gene: cd09696:cas3 Type: Subtype-I-U Location: 52531-55764 bp Gene: pfam13280:WYL Type: other Location: 55777-56685 bp Gene: unk Type: unknown Location: 56965-57855 bp Gene: unk Type: unknown Location: 57990-58307 bp Gene: mkCas0115:csx3 Type: other Location: 58300-59331 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JTUA01000088.1 Pseudomonas aeruginosa strain AZPAE14862 AZPAE14862_contig_88, whole genome shotgun sequence

⇒Summary: seq-len = 12392 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 189-756 bp Zoom in on locus 1 x10 CRISPR array Location: 189-756 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 189-756 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 189-756 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: JTUA01000039.1 Pseudomonas aeruginosa strain AZPAE14862 AZPAE14862_contig_39, whole genome shotgun sequence

⇒Summary: seq-len = 104425 bp; # of CRISPR array = 0; # of cas gene = 2  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 46277-48484 bp Zoom in on locus 1 Gene: COG2378:WYL Type: other Location: 46277-47248 bp Gene: unk Type: unknown Location: 47357-48043 bp Gene: cd09693:cas5 Type: Type-I Location: 48077-48484 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)