CRISPRone

CRISPRone report for GCA_000790145.1_AZPAE14863

♦ Seq 1: JTTZ01000025.1 Pseudomonas aeruginosa strain AZPAE14863 AZPAE14863_contig_25, whole genome shotgun sequence

⇒Summary: seq-len = 97965 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5823-6151 bp Zoom in on locus 1 x6 CRISPR array Location: 5823-6151 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 5823-6151 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5823-6151 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JTTZ01000081.1 Pseudomonas aeruginosa strain AZPAE14863 AZPAE14863_contig_81, whole genome shotgun sequence

⇒Summary: seq-len = 48845 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37154-47883 bp Zoom in on locus 1 x15 x22 CRISPR array Location: 37154-38022 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 37154-38022 bp Num of repeats: 15 Spacers: s1-s14 Gene: cd09739:cas6f Type: other Location: 38205-38768 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 38772-39800 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 39811-40794 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 40781-42085 bp Gene: COG1203:cas3 Type: Type-I Location: 42143-45373 bp Gene: cd09718:cas1 Type: universal Location: 45370-46344 bp CRISPR array Location: 46596-47883 bp Num of repeats: 22 Spacers: s15-s35 CRISPR array Location: 46596-47883 bp Num of repeats: 22 Spacers: s15-s35 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 37154-38022 bp]: array | spacers
           [Locus range 46596-47883 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)