CRISPRone

CRISPRone report for GCA_000790185.1_AZPAE14865

♦ Seq 1: JTTX01000004.1 Pseudomonas aeruginosa strain AZPAE14865 AZPAE14865_contig_4, whole genome shotgun sequence

⇒Summary: seq-len = 48159 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37493-47922 bp Zoom in on locus 1 x17 x15 CRISPR array Location: 37493-38481 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 37493-38481 bp Num of repeats: 17 Spacers: s1-s16 Gene: cd09739:cas6f Type: other Location: 38664-39227 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39231-40259 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40270-41253 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41240-42544 bp Gene: COG1203:cas3 Type: Type-I Location: 42602-45832 bp Gene: cd09718:cas1 Type: universal Location: 45829-46803 bp CRISPR array Location: 47055-47922 bp Num of repeats: 15 Spacers: s17-s30 CRISPR array Location: 47055-47922 bp Num of repeats: 15 Spacers: s17-s30 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 37493-38481 bp]: array | spacers
           [Locus range 47055-47922 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JTTX01000034.1 Pseudomonas aeruginosa strain AZPAE14865 AZPAE14865_contig_34, whole genome shotgun sequence

⇒Summary: seq-len = 56306 bp; # of CRISPR array = 0; # of cas gene = 4  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 42163-52024 bp Zoom in on locus 1 Gene: COG1199:DinG Type: Subtype-IV-A Location: 42163-44529 bp Gene: unk Type: unknown Location: 44922-45569 bp Gene: unk Type: unknown Location: 45635-46003 bp Gene: pfam13280:WYL Type: other Location: 46053-46928 bp Gene: unk Type: unknown Location: 46943-47476 bp Gene: unk Type: unknown Location: 47786-47965 bp Gene: unk Type: unknown Location: 48034-48273 bp Gene: pfam13280:WYL Type: other Location: 49237-50253 bp Gene: mkCas0115:csx3 Type: other Location: 50414-52024 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JTTX01000062.1 Pseudomonas aeruginosa strain AZPAE14865 AZPAE14865_contig_62, whole genome shotgun sequence

⇒Summary: seq-len = 92749 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 91945-92512 bp Zoom in on locus 1 x10 CRISPR array Location: 91945-92512 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 91945-92512 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 91945-92512 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)