CRISPRone

CRISPRone report for GCA_000790355.1_AZPAE14872

♦ Seq 1: JTTQ01000015.1 Pseudomonas aeruginosa strain AZPAE14872 AZPAE14872_contig_15, whole genome shotgun sequence

⇒Summary: seq-len = 89328 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 36944-48103 bp Zoom in on locus 1 x12 x32 CRISPR array Location: 36944-37632 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 36944-37632 bp Num of repeats: 12 Spacers: s1-s11 Gene: cd09739:cas6f Type: other Location: 37815-38378 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 38382-39410 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 39421-40404 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 40391-41695 bp Gene: COG1203:cas3 Type: Type-I Location: 41753-44983 bp Gene: cd09718:cas1 Type: universal Location: 44980-45954 bp CRISPR array Location: 46216-48103 bp Num of repeats: 32 Spacers: s12-s42 CRISPR array Location: 46216-48103 bp Num of repeats: 32 Spacers: s12-s42 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 36944-37632 bp]: array | spacers
           [Locus range 46216-48103 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JTTQ01000024.1 Pseudomonas aeruginosa strain AZPAE14872 AZPAE14872_contig_24, whole genome shotgun sequence

⇒Summary: seq-len = 215632 bp; # of CRISPR array = 0; # of cas gene = 3  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 148646-158101 bp Zoom in on locus 1 Gene: COG1199:DinG Type: Subtype-IV-A Location: 148646-151012 bp Gene: unk Type: unknown Location: 151405-152052 bp Gene: unk Type: unknown Location: 152076-153656 bp Gene: pfam13280:WYL Type: other Location: 153786-154661 bp Gene: unk Type: unknown Location: 154675-155256 bp Gene: unk Type: unknown Location: 155662-155880 bp Gene: unk Type: unknown Location: 155933-156214 bp Gene: pfam13280:WYL Type: other Location: 157025-158101 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)