CRISPRone

CRISPRone report for GCA_000790605.1_AZPAE14882

♦ Seq 1: JTTG01000003.1 Pseudomonas aeruginosa strain AZPAE14882 AZPAE14882_contig_3, whole genome shotgun sequence

⇒Summary: seq-len = 517576 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 126681-127668 bp Zoom in on locus 1 x17 CRISPR array Location: 126681-127668 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 126681-127668 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 126681-127668 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JTTG01000023.1 Pseudomonas aeruginosa strain AZPAE14882 AZPAE14882_contig_23, whole genome shotgun sequence

⇒Summary: seq-len = 208301 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 61588-71488 bp Zoom in on locus 1 x8 x15 CRISPR array Location: 61588-62036 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 61588-62036 bp Num of repeats: 8 Spacers: s1-s7 Gene: cd09739:cas6f Type: other Location: 62220-62783 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 62787-63815 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 63826-64809 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 64796-66100 bp Gene: COG1203:cas3 Type: Type-I Location: 66158-69388 bp Gene: cd09718:cas1 Type: universal Location: 69385-70359 bp CRISPR array Location: 70621-71488 bp Num of repeats: 15 Spacers: s8-s21 CRISPR array Location: 70621-71488 bp Num of repeats: 15 Spacers: s8-s21 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 61588-62036 bp]: array | spacers
           [Locus range 70621-71488 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)