CRISPRone

CRISPRone report for GCA_000790645.1_AZPAE14883

♦ Seq 1: JTTF01000017.1 Pseudomonas aeruginosa strain AZPAE14883 AZPAE14883_contig_17, whole genome shotgun sequence

⇒Summary: seq-len = 443231 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 348960-350849 bp Zoom in on locus 1 x32 CRISPR array Location: 348960-350849 bp Num of repeats: 32 Spacers: s1-s31 CRISPR array Location: 348960-350849 bp Num of repeats: 32 Spacers: s1-s31 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 348960-350849 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JTTF01000040.1 Pseudomonas aeruginosa strain AZPAE14883 AZPAE14883_contig_40, whole genome shotgun sequence

⇒Summary: seq-len = 92651 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 54190-64801 bp Zoom in on locus 1 x15 x14 CRISPR array Location: 54190-55060 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 54190-55060 bp Num of repeats: 15 Spacers: s1-s14 Gene: cd09739:cas6f Type: other Location: 55243-55806 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 55810-56838 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 56849-57832 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 57819-59120 bp Gene: COG1203:cas3 Type: Type-I Location: 59531-62761 bp Gene: cd09718:cas1 Type: universal Location: 62758-63732 bp CRISPR array Location: 63993-64801 bp Num of repeats: 14 Spacers: s15-s27 CRISPR array Location: 63993-64801 bp Num of repeats: 14 Spacers: s15-s27 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 54190-55060 bp]: array | spacers
           [Locus range 63993-64801 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JTTF01000092.1 Pseudomonas aeruginosa strain AZPAE14883 AZPAE14883_contig_92, whole genome shotgun sequence

⇒Summary: seq-len = 4005 bp; # of CRISPR array = 0; # of cas gene = 1  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3790-4002 bp Zoom in on locus 1 Gene: cd09693:cas5 Type: Type-I Location: 3790-4002 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)