CRISPRone

CRISPRone report for GCA_000790685.1_AZPAE14885

♦ Seq 1: JTTD01000073.1 Pseudomonas aeruginosa strain AZPAE14885 AZPAE14885_contig_73, whole genome shotgun sequence

⇒Summary: seq-len = 37357 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37217-37305 bp Zoom in on locus 1 x2 CRISPR array Location: 37217-37305 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 37217-37305 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 37217-37305 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JTTD01000074.1 Pseudomonas aeruginosa strain AZPAE14885 AZPAE14885_contig_74, whole genome shotgun sequence

⇒Summary: seq-len = 10763 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 22-10750 bp Zoom in on locus 1 x14 x17 CRISPR array Location: 22-830 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 22-830 bp Num of repeats: 14 Spacers: s1-s13 Gene: cd09739:cas6f Type: other Location: 1013-1576 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 1580-2608 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 2619-3602 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 3589-4890 bp Gene: COG1203:cas3 Type: Type-I Location: 5301-8531 bp Gene: cd09718:cas1 Type: universal Location: 8528-9502 bp CRISPR array Location: 9763-10750 bp Num of repeats: 17 Spacers: s14-s29 CRISPR array Location: 9763-10750 bp Num of repeats: 17 Spacers: s14-s29 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 22-830 bp]: array | spacers
           [Locus range 9763-10750 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JTTD01000006.1 Pseudomonas aeruginosa strain AZPAE14885 AZPAE14885_contig_6, whole genome shotgun sequence

⇒Summary: seq-len = 344651 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 311049-312096 bp Zoom in on locus 1 x18 CRISPR array Location: 311049-312096 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 311049-312096 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 311049-312096 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)