CRISPRone

CRISPRone report for GCA_000790865.1_AZPAE14891

♦ Seq 1: JTSX01000019.1 Pseudomonas aeruginosa strain AZPAE14891 AZPAE14891_contig_19, whole genome shotgun sequence

⇒Summary: seq-len = 70130 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 21992-32013 bp Zoom in on locus 1 x12 x13 CRISPR array Location: 21992-22680 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 21992-22680 bp Num of repeats: 12 Spacers: s1-s11 Gene: cd09718:cas1 Type: universal Location: 22944-23918 bp Gene: COG1203:cas3 Type: Type-I Location: 23915-27145 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 27203-28507 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 28494-29477 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 29488-30516 bp Gene: cd09739:cas6f Type: other Location: 30520-31083 bp CRISPR array Location: 31266-32013 bp Num of repeats: 13 Spacers: s12-s23 CRISPR array Location: 31266-32013 bp Num of repeats: 13 Spacers: s12-s23 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 21992-22680 bp]: array | spacers
           [Locus range 31266-32013 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JTSX01000008.1 Pseudomonas aeruginosa strain AZPAE14891 AZPAE14891_contig_8, whole genome shotgun sequence

⇒Summary: seq-len = 512029 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 399881-400989 bp Zoom in on locus 1 x19 CRISPR array Location: 399881-400989 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 399881-400989 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 399881-400989 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)