CRISPRone

CRISPRone report for GCA_000791105.1_AZPAE14901

♦ Seq 1: JTSO01000106.1 Pseudomonas aeruginosa strain AZPAE14901 AZPAE14901_contig_106, whole genome shotgun sequence

⇒Summary: seq-len = 48420 bp; # of CRISPR array = 1; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38890-48122 bp Zoom in on locus 1 x14 CRISPR array Location: 38890-39699 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 38890-39699 bp Num of repeats: 14 Spacers: s1-s13 Gene: pfam09618:cas6f Type: Subtype-I-F Location: 39977-40480 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 40544-41572 bp Gene: pfam09614:cas5f Type: Subtype-I-F Location: 41583-42566 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 42553-43857 bp Gene: COG1203:cas3 Type: Type-I Location: 43915-47151 bp Gene: cd09718:cas1 Type: universal Location: 47148-48122 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38890-39699 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JTSO01000044.1 Pseudomonas aeruginosa strain AZPAE14901 AZPAE14901_contig_44, whole genome shotgun sequence

⇒Summary: seq-len = 56345 bp; # of CRISPR array = 0; # of cas gene = 2  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 51665-53867 bp Zoom in on locus 1 Gene: COG2378:WYL Type: other Location: 51665-52636 bp Gene: unk Type: unknown Location: 52746-53432 bp Gene: cd09693:cas5 Type: Type-I Location: 53460-53867 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JTSO01000076.1 Pseudomonas aeruginosa strain AZPAE14901 AZPAE14901_contig_76, whole genome shotgun sequence

⇒Summary: seq-len = 16603 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 15936-16503 bp Zoom in on locus 1 x10 CRISPR array Location: 15936-16503 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 15936-16503 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 15936-16503 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: JTSO01000005.1 Pseudomonas aeruginosa strain AZPAE14901 AZPAE14901_contig_5, whole genome shotgun sequence

⇒Summary: seq-len = 39750 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4704-5273 bp Zoom in on locus 1 x10 CRISPR array Location: 4704-5273 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 4704-5273 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4704-5273 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: JTSO01000018.1 Pseudomonas aeruginosa strain AZPAE14901 AZPAE14901_contig_18, whole genome shotgun sequence

⇒Summary: seq-len = 21886 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 21259-21887 bp Zoom in on locus 1 x11 CRISPR array Location: 21259-21887 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 21259-21887 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 21259-21887 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)