CRISPRone

CRISPRone report for GCA_000791145.1_AZPAE14903

♦ Seq 1: JTSM01000086.1 Pseudomonas aeruginosa strain AZPAE14903 AZPAE14903_contig_86, whole genome shotgun sequence

⇒Summary: seq-len = 196950 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 190450-191138 bp Zoom in on locus 1 x12 CRISPR array Location: 190450-191138 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 190450-191138 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 190450-191138 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JTSM01000107.1 Pseudomonas aeruginosa strain AZPAE14903 AZPAE14903_contig_107, whole genome shotgun sequence

⇒Summary: seq-len = 46856 bp; # of CRISPR array = 1; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 376-10080 bp Zoom in on locus 1 x17 Gene: cd09718:cas1 Type: universal Location: 376-1350 bp Gene: COG1203:cas3 Type: Type-I Location: 1347-4577 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 5216-6334 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 6321-7304 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 7315-8343 bp Gene: cd09739:cas6f Type: other Location: 8347-8910 bp CRISPR array Location: 9093-10080 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 9093-10080 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 9093-10080 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JTSM01000100.1 Pseudomonas aeruginosa strain AZPAE14903 AZPAE14903_contig_100, whole genome shotgun sequence

⇒Summary: seq-len = 2144 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 48-1257 bp Zoom in on locus 1 x5 x15 CRISPR array Location: 48-315 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 48-315 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 388-1257 bp Num of repeats: 15 Spacers: s5-s18 CRISPR array Location: 388-1257 bp Num of repeats: 15 Spacers: s5-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 48-315 bp]: array | spacers
           [Locus range 388-1257 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)