CRISPRone

CRISPRone report for GCA_000791185.1_AZPAE14922

♦ Seq 1: JTRT01000043.1 Pseudomonas aeruginosa strain AZPAE14922 AZPAE14922_contig_43, whole genome shotgun sequence

⇒Summary: seq-len = 139937 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 138290-139938 bp Zoom in on locus 1 x6 x19 CRISPR array Location: 138290-138618 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 138290-138618 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 138829-139938 bp Num of repeats: 19 Spacers: s6-s23 CRISPR array Location: 138829-139938 bp Num of repeats: 19 Spacers: s6-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 138290-138618 bp]: array | spacers
           [Locus range 138829-139938 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JTRT01000020.1 Pseudomonas aeruginosa strain AZPAE14922 AZPAE14922_contig_20, whole genome shotgun sequence

⇒Summary: seq-len = 247082 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 147696-148624 bp Zoom in on locus 1 x16 CRISPR array Location: 147696-148624 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 147696-148624 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 147696-148624 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JTRT01000029.1 Pseudomonas aeruginosa strain AZPAE14922 AZPAE14922_contig_29, whole genome shotgun sequence

⇒Summary: seq-len = 139397 bp; # of CRISPR array = 0; # of cas gene = 4  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 32985-41246 bp Zoom in on locus 1 Gene: COG1199:DinG Type: Subtype-IV-A Location: 32985-35351 bp Gene: unk Type: unknown Location: 35744-36391 bp Gene: unk Type: unknown Location: 36457-36744 bp Gene: COG2378:WYL Type: other Location: 36875-37717 bp Gene: pfam13280:WYL Type: other Location: 38459-39475 bp Gene: mkCas0115:csx3 Type: other Location: 39621-41246 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: JTRT01000002.1 Pseudomonas aeruginosa strain AZPAE14922 AZPAE14922_contig_2, whole genome shotgun sequence

⇒Summary: seq-len = 280010 bp; # of CRISPR array = 1; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 164-9832 bp Zoom in on locus 1 x23 Gene: cd09718:cas1 Type: universal Location: 164-1138 bp Gene: COG1203:cas3 Type: Type-I Location: 1135-4365 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 4423-5727 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 5714-6697 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 6708-7736 bp Gene: cd09739:cas6f Type: other Location: 7740-8303 bp CRISPR array Location: 8488-9832 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 8488-9832 bp Num of repeats: 23 Spacers: s1-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 8488-9832 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)