CRISPRone

CRISPRone report for GCA_000791485.1_AZPAE14948

♦ Seq 1: JTQT01000011.1 Pseudomonas aeruginosa strain AZPAE14948 AZPAE14948_contig_11, whole genome shotgun sequence

⇒Summary: seq-len = 154540 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 30193-43283 bp Zoom in on locus 1 Gene: COG0640:csa3 Type: Subtype-I-A Location: 30193-30498 bp Gene: unk Type: unknown Location: 31034-31624 bp Gene: cd09641:cas3HD Type: Type-I Location: 31440-33299 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 42966-43283 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JTQT01000055.1 Pseudomonas aeruginosa strain AZPAE14948 AZPAE14948_contig_55, whole genome shotgun sequence

⇒Summary: seq-len = 73200 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 25982-36426 bp Zoom in on locus 1 x19 x12 CRISPR array Location: 25982-27090 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 25982-27090 bp Num of repeats: 19 Spacers: s1-s18 Gene: cd09718:cas1 Type: universal Location: 27350-28324 bp Gene: COG1203:cas3 Type: Type-I Location: 28321-31551 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 31609-32913 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 32900-33883 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 33894-34922 bp Gene: cd09739:cas6f Type: other Location: 34926-35489 bp CRISPR array Location: 35739-36426 bp Num of repeats: 12 Spacers: s19-s29 CRISPR array Location: 35739-36426 bp Num of repeats: 12 Spacers: s19-s29 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 25982-27090 bp]: array | spacers
           [Locus range 35739-36426 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)