CRISPRone

CRISPRone report for GCA_000791585.1_AZPAE14952

♦ Seq 1: JTQP01000015.1 Pseudomonas aeruginosa strain AZPAE14952 AZPAE14952_contig_15, whole genome shotgun sequence

⇒Summary: seq-len = 127717 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 127623-127710 bp Zoom in on locus 1 x2 CRISPR array Location: 127623-127710 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 127623-127710 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 127623-127710 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JTQP01000003.1 Pseudomonas aeruginosa strain AZPAE14952 AZPAE14952_contig_3, whole genome shotgun sequence

⇒Summary: seq-len = 385363 bp; # of CRISPR array = 3; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 30179-41867 bp Zoom in on locus 1 x15 x5 x26 CRISPR array Location: 30179-31048 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 30179-31048 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 31140-31407 bp Num of repeats: 5 Spacers: s15-s18 CRISPR array Location: 31140-31407 bp Num of repeats: 5 Spacers: s15-s18 Gene: pfam09618:cas6f Type: Subtype-I-F Location: 31590-32153 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 32157-33185 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 33196-34179 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 34166-35467 bp Gene: COG1203:cas3 Type: Type-I Location: 35878-39108 bp Gene: cd09718:cas1 Type: universal Location: 39105-40079 bp CRISPR array Location: 40340-41867 bp Num of repeats: 26 Spacers: s19-s43 CRISPR array Location: 40340-41867 bp Num of repeats: 26 Spacers: s19-s43 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 30179-31048 bp]: array | spacers
           [Locus range 31140-31407 bp]: array | spacers
           [Locus range 40340-41867 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)