CRISPRone

CRISPRone report for GCA_000791625.1_AZPAE14954

♦ Seq 1: JTQN01000022.1 Pseudomonas aeruginosa strain AZPAE14954 AZPAE14954_contig_22, whole genome shotgun sequence

⇒Summary: seq-len = 135627 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 40174-50793 bp Zoom in on locus 1 x19 x16 CRISPR array Location: 40174-41283 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 40174-41283 bp Num of repeats: 19 Spacers: s1-s18 Gene: cd09718:cas1 Type: universal Location: 41543-42517 bp Gene: COG1203:cas3 Type: Type-I Location: 42514-45744 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 45802-47106 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 47093-48076 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 48087-49115 bp Gene: cd09739:cas6f Type: other Location: 49119-49682 bp CRISPR array Location: 49866-50793 bp Num of repeats: 16 Spacers: s19-s33 CRISPR array Location: 49866-50793 bp Num of repeats: 16 Spacers: s19-s33 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 40174-41283 bp]: array | spacers
           [Locus range 49866-50793 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JTQN01000002.1 Pseudomonas aeruginosa strain AZPAE14954 AZPAE14954_contig_2, whole genome shotgun sequence

⇒Summary: seq-len = 413903 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 302280-302909 bp Zoom in on locus 1 x11 CRISPR array Location: 302280-302909 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 302280-302909 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 302280-302909 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)