CRISPRone

CRISPRone report for GCA_000791665.1_AZPAE15050

♦ Seq 1: JTMW01000057.1 Pseudomonas aeruginosa strain AZPAE15050 AZPAE15050_contig_57, whole genome shotgun sequence

⇒Summary: seq-len = 290507 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 201088-202629 bp Zoom in on locus 1 Gene: cd09666:cas8a2 Type: Subtype-I-A Location: 201088-202254 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 202303-202629 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JTMW01000094.1 Pseudomonas aeruginosa strain AZPAE15050 AZPAE15050_contig_94, whole genome shotgun sequence

⇒Summary: seq-len = 76197 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37119-47980 bp Zoom in on locus 1 x8 x31 CRISPR array Location: 37119-37567 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 37119-37567 bp Num of repeats: 8 Spacers: s1-s7 Gene: cd09739:cas6f Type: other Location: 37751-38314 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 38318-39346 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 39357-40340 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 40327-41631 bp Gene: COG1203:cas3 Type: Type-I Location: 41689-44919 bp Gene: cd09718:cas1 Type: universal Location: 44916-45890 bp CRISPR array Location: 46152-47980 bp Num of repeats: 31 Spacers: s8-s37 CRISPR array Location: 46152-47980 bp Num of repeats: 31 Spacers: s8-s37 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 37119-37567 bp]: array | spacers
           [Locus range 46152-47980 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JTMW01000052.1 Pseudomonas aeruginosa strain AZPAE15050 AZPAE15050_contig_52, whole genome shotgun sequence

⇒Summary: seq-len = 84890 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 32362-42751 bp Zoom in on locus 1 Gene: cls000170:cas4 Type: Type-I Location: 32362-33906 bp Gene: unk Type: unknown Location: 34990-35169 bp Gene: unk Type: unknown Location: 35353-35751 bp Gene: pfam00078:RT Type: other Location: 35901-37169 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 41882-42751 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: JTMW01000041.1 Pseudomonas aeruginosa strain AZPAE15050 AZPAE15050_contig_41, whole genome shotgun sequence

⇒Summary: seq-len = 29048 bp; # of CRISPR array = 0; # of cas gene = 3  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17470-21841 bp Zoom in on locus 1 Gene: COG2378:WYL Type: other Location: 17470-18312 bp Gene: unk Type: unknown Location: 18590-18811 bp Gene: pfam13280:WYL Type: other Location: 19054-20070 bp Gene: mkCas0115:csx3 Type: other Location: 20129-21841 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)