CRISPRone

CRISPRone report for GCA_000791805.1_AZPAE14962

♦ Seq 1: JTQF01000012.1 Pseudomonas aeruginosa strain AZPAE14962 AZPAE14962_contig_12, whole genome shotgun sequence

⇒Summary: seq-len = 423508 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 280779-291474 bp Zoom in on locus 1 x12 x13 CRISPR array Location: 280779-281479 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 280779-281479 bp Num of repeats: 12 Spacers: s1-s11 Gene: cd09641:cas3HD Type: Type-I Location: 282253-284934 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 284937-286505 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 286502-287032 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 287042-288184 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 288186-288848 bp Gene: pfam08798:cas6e Type: other Location: 288823-289434 bp Gene: COG1518:cas1 Type: universal Location: 289461-289895 bp Gene: COG1518:cas1 Type: universal Location: 289902-290351 bp Gene: pfam09707:cas2 Type: universal Location: 290348-290647 bp CRISPR array Location: 290712-291474 bp Num of repeats: 13 Spacers: s12-s23 CRISPR array Location: 290712-291474 bp Num of repeats: 13 Spacers: s12-s23 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 280779-281479 bp]: array | spacers
           [Locus range 290712-291474 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JTQF01000024.1 Pseudomonas aeruginosa strain AZPAE14962 AZPAE14962_contig_24, whole genome shotgun sequence

⇒Summary: seq-len = 93347 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 40049-53139 bp Zoom in on locus 1 Gene: COG0640:csa3 Type: Subtype-I-A Location: 40049-40351 bp Gene: cd09641:cas3HD Type: Type-I Location: 50033-51892 bp Gene: unk Type: unknown Location: 52065-52298 bp Gene: unk Type: unknown Location: 52413-52787 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 52834-53139 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)