CRISPRone

CRISPRone report for GCA_000791835.1_AZPAE14964

♦ Seq 1: JTQD01000014.1 Pseudomonas aeruginosa strain AZPAE14964 AZPAE14964_contig_14, whole genome shotgun sequence

⇒Summary: seq-len = 515621 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 200326-210837 bp Zoom in on locus 1 x13 x9 CRISPR array Location: 200326-201087 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 200326-201087 bp Num of repeats: 13 Spacers: s1-s12 Gene: pfam09707:cas2 Type: universal Location: 201152-201451 bp Gene: cd09719:cas1 Type: universal Location: 201448-202338 bp Gene: pfam08798:cas6e Type: other Location: 202365-202904 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 202951-203613 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 203615-204757 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 204767-205297 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 205294-206862 bp Gene: cd09641:cas3HD Type: Type-I Location: 206865-209546 bp CRISPR array Location: 210320-210837 bp Num of repeats: 9 Spacers: s13-s20 CRISPR array Location: 210320-210837 bp Num of repeats: 9 Spacers: s13-s20 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 200326-201087 bp]: array | spacers
           [Locus range 210320-210837 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JTQD01000017.1 Pseudomonas aeruginosa strain AZPAE14964 AZPAE14964_contig_17, whole genome shotgun sequence

⇒Summary: seq-len = 150877 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 31797-42204 bp Zoom in on locus 1 Gene: cls000170:cas4 Type: Type-I Location: 31797-33341 bp Gene: unk Type: unknown Location: 34425-34604 bp Gene: unk Type: unknown Location: 34788-35186 bp Gene: pfam00078:RT Type: other Location: 35336-36604 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 41335-42204 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)