CRISPRone

CRISPRone report for GCA_000791855.1_AZPAE15031

♦ Seq 1: JTNP01000004.1 Pseudomonas aeruginosa strain AZPAE15031 AZPAE15031_contig_4, whole genome shotgun sequence

⇒Summary: seq-len = 593672 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 206246-216757 bp Zoom in on locus 1 x13 x9 CRISPR array Location: 206246-207007 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 206246-207007 bp Num of repeats: 13 Spacers: s1-s12 Gene: pfam09707:cas2 Type: universal Location: 207072-207371 bp Gene: cd09719:cas1 Type: universal Location: 207368-208258 bp Gene: pfam08798:cas6e Type: other Location: 208285-208824 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 208871-209533 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 209535-210677 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 210687-211217 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 211214-212782 bp Gene: cd09641:cas3HD Type: Type-I Location: 212785-215466 bp CRISPR array Location: 216240-216757 bp Num of repeats: 9 Spacers: s13-s20 CRISPR array Location: 216240-216757 bp Num of repeats: 9 Spacers: s13-s20 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 206246-207007 bp]: array | spacers
           [Locus range 216240-216757 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JTNP01000010.1 Pseudomonas aeruginosa strain AZPAE15031 AZPAE15031_contig_10, whole genome shotgun sequence

⇒Summary: seq-len = 150519 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 108765-119141 bp Zoom in on locus 1 Gene: COG0640:csa3 Type: Subtype-I-A Location: 108765-109634 bp Gene: pfam00078:RT Type: other Location: 114334-115602 bp Gene: unk Type: unknown Location: 115752-116150 bp Gene: unk Type: unknown Location: 116334-116513 bp Gene: cls000170:cas4 Type: Type-I Location: 117597-119141 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)