CRISPRone

CRISPRone report for GCA_000792005.1_AZPAE14971

♦ Seq 1: JTPX01000015.1 Pseudomonas aeruginosa strain AZPAE14971 AZPAE14971_contig_15, whole genome shotgun sequence

⇒Summary: seq-len = 50753 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38682-50729 bp Zoom in on locus 1 x29 x24 CRISPR array Location: 38682-40387 bp Num of repeats: 29 Spacers: s1-s28 CRISPR array Location: 38682-40387 bp Num of repeats: 29 Spacers: s1-s28 Gene: cd09739:cas6f Type: other Location: 40571-41134 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 41138-42166 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 42177-43160 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 43147-44448 bp Gene: COG1203:cas3 Type: Type-I Location: 44859-48089 bp Gene: cd09718:cas1 Type: universal Location: 48086-49060 bp CRISPR array Location: 49321-50729 bp Num of repeats: 24 Spacers: s29-s51 CRISPR array Location: 49321-50729 bp Num of repeats: 24 Spacers: s29-s51 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38682-40387 bp]: array | spacers
           [Locus range 49321-50729 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JTPX01000038.1 Pseudomonas aeruginosa strain AZPAE14971 AZPAE14971_contig_38, whole genome shotgun sequence

⇒Summary: seq-len = 62886 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 25-593 bp Zoom in on locus 1 x10 CRISPR array Location: 25-593 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 25-593 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 25-593 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)