CRISPRone

CRISPRone report for GCA_000792115.1_AZPAE14976

♦ Seq 1: JTPS01000022.1 Pseudomonas aeruginosa strain AZPAE14976 AZPAE14976_contig_22, whole genome shotgun sequence

⇒Summary: seq-len = 390285 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 326915-327964 bp Zoom in on locus 1 x18 CRISPR array Location: 326915-327964 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 326915-327964 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 326915-327964 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JTPS01000040.1 Pseudomonas aeruginosa strain AZPAE14976 AZPAE14976_contig_40, whole genome shotgun sequence

⇒Summary: seq-len = 75208 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 36766-47151 bp Zoom in on locus 1 x13 x17 CRISPR array Location: 36766-37515 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 36766-37515 bp Num of repeats: 13 Spacers: s1-s12 Gene: cd09739:cas6f Type: other Location: 37764-38327 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 38331-39359 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 39370-40353 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 40340-41644 bp Gene: COG1203:cas3 Type: Type-I Location: 41702-44932 bp Gene: cd09718:cas1 Type: universal Location: 44929-45903 bp CRISPR array Location: 46164-47151 bp Num of repeats: 17 Spacers: s13-s28 CRISPR array Location: 46164-47151 bp Num of repeats: 17 Spacers: s13-s28 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 36766-37515 bp]: array | spacers
           [Locus range 46164-47151 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)