CRISPRone

CRISPRone report for GCA_000792145.1_AZPAE15029

♦ Seq 1: JTNR01000044.1 Pseudomonas aeruginosa strain AZPAE15029 AZPAE15029_contig_44, whole genome shotgun sequence

⇒Summary: seq-len = 210958 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 62323-63250 bp Zoom in on locus 1 x16 CRISPR array Location: 62323-63250 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 62323-63250 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 62323-63250 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JTNR01000036.1 Pseudomonas aeruginosa strain AZPAE15029 AZPAE15029_contig_36, whole genome shotgun sequence

⇒Summary: seq-len = 95910 bp; # of CRISPR array = 0; # of cas gene = 4  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 32983-41244 bp Zoom in on locus 1 Gene: COG1199:DinG Type: Subtype-IV-A Location: 32983-35349 bp Gene: unk Type: unknown Location: 35742-36389 bp Gene: unk Type: unknown Location: 36455-36823 bp Gene: COG2378:WYL Type: other Location: 36873-37715 bp Gene: pfam13280:WYL Type: other Location: 38457-39473 bp Gene: mkCas0115:csx3 Type: other Location: 39634-41244 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JTNR01000015.1 Pseudomonas aeruginosa strain AZPAE15029 AZPAE15029_contig_15, whole genome shotgun sequence

⇒Summary: seq-len = 139858 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 105-1693 bp Zoom in on locus 1 x27 CRISPR array Location: 105-1693 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 105-1693 bp Num of repeats: 27 Spacers: s1-s26 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 105-1693 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: JTNR01000007.1 Pseudomonas aeruginosa strain AZPAE15029 AZPAE15029_contig_7, whole genome shotgun sequence

⇒Summary: seq-len = 280022 bp; # of CRISPR array = 1; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 270179-279847 bp Zoom in on locus 1 x23 CRISPR array Location: 270179-271524 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 270179-271524 bp Num of repeats: 23 Spacers: s1-s22 Gene: cd09739:cas6f Type: other Location: 271708-272271 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 272275-273303 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 273314-274297 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 274284-275588 bp Gene: COG1203:cas3 Type: Type-I Location: 275646-278876 bp Gene: cd09718:cas1 Type: universal Location: 278873-279847 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 270179-271524 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)