CRISPRone

CRISPRone report for GCA_000792165.1_AZPAE14978

♦ Seq 1: JTPQ01000004.1 Pseudomonas aeruginosa strain AZPAE14978 AZPAE14978_contig_4, whole genome shotgun sequence

⇒Summary: seq-len = 107257 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 53599-65058 bp Zoom in on locus 1 x16 x33 CRISPR array Location: 53599-54527 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 53599-54527 bp Num of repeats: 16 Spacers: s1-s15 Gene: cd09739:cas6f Type: other Location: 54710-55273 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 55277-56305 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 56316-57299 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 57286-58590 bp Gene: COG1203:cas3 Type: Type-I Location: 58648-61878 bp Gene: cd09718:cas1 Type: universal Location: 61875-62849 bp CRISPR array Location: 63111-65058 bp Num of repeats: 33 Spacers: s16-s47 CRISPR array Location: 63111-65058 bp Num of repeats: 33 Spacers: s16-s47 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 53599-54527 bp]: array | spacers
           [Locus range 63111-65058 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JTPQ01000026.1 Pseudomonas aeruginosa strain AZPAE14978 AZPAE14978_contig_26, whole genome shotgun sequence

⇒Summary: seq-len = 128854 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 33158-39428 bp Zoom in on locus 1 x9 Gene: pfam03787:csm3gr7 Type: Type-III Location: 33158-34258 bp Gene: pfam09618:cas6f Type: Subtype-I-F Location: 34246-34800 bp Gene: COG1199:DinG Type: Subtype-IV-A Location: 34814-37027 bp Gene: mkCas0093:csf3gr5 Type: Subtype-IV-A Location: 37027-37707 bp Gene: COG1518:cas1 Type: universal Location: 37712-38581 bp Gene: cd09673:cas3f Type: Subtype-I-F Location: 38562-38897 bp CRISPR array Location: 38921-39428 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 38921-39428 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38921-39428 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JTPQ01000075.1 Pseudomonas aeruginosa strain AZPAE14978 AZPAE14978_contig_76, whole genome shotgun sequence

⇒Summary: seq-len = 61565 bp; # of CRISPR array = 0; # of cas gene = 3  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 48974-57415 bp Zoom in on locus 1 Gene: cd09639:cas3 Type: Type-I Location: 48974-51052 bp Gene: pfam13280:WYL Type: other Location: 51054-51959 bp Gene: pfam00078:RT Type: other Location: 56147-57415 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: JTPQ01000012.1 Pseudomonas aeruginosa strain AZPAE14978 AZPAE14978_contig_12, whole genome shotgun sequence

⇒Summary: seq-len = 282788 bp; # of CRISPR array = 0; # of cas gene = 3  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 148645-158100 bp Zoom in on locus 1 Gene: COG1199:DinG Type: Subtype-IV-A Location: 148645-151011 bp Gene: unk Type: unknown Location: 151404-152051 bp Gene: unk Type: unknown Location: 152075-153655 bp Gene: pfam13280:WYL Type: other Location: 153785-154660 bp Gene: unk Type: unknown Location: 154674-155255 bp Gene: unk Type: unknown Location: 155661-155879 bp Gene: unk Type: unknown Location: 155932-156213 bp Gene: pfam13280:WYL Type: other Location: 157024-158100 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)