CRISPRone

CRISPRone report for GCA_000792325.1_AZPAE14984

♦ Seq 1: JTPK01000002.1 Pseudomonas aeruginosa strain AZPAE14984 AZPAE14984_contig_2, whole genome shotgun sequence

⇒Summary: seq-len = 282740 bp; # of CRISPR array = 3; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 270180-281860 bp Zoom in on locus 1 x23 x19 x6 CRISPR array Location: 270180-271525 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 270180-271525 bp Num of repeats: 23 Spacers: s1-s22 Gene: cd09739:cas6f Type: other Location: 271787-272350 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 272354-273382 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 273393-274376 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 274363-275667 bp Gene: COG1203:cas3 Type: Type-I Location: 275725-278955 bp Gene: cd09718:cas1 Type: universal Location: 278952-279926 bp CRISPR array Location: 280188-281296 bp Num of repeats: 19 Spacers: s23-s40 CRISPR array Location: 280188-281296 bp Num of repeats: 19 Spacers: s23-s40 CRISPR array Location: 281533-281860 bp Num of repeats: 6 Spacers: s41-s45 CRISPR array Location: 281533-281860 bp Num of repeats: 6 Spacers: s41-s45 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 270180-271525 bp]: array | spacers
           [Locus range 280188-281296 bp]: array | spacers
           [Locus range 281533-281860 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JTPK01000007.1 Pseudomonas aeruginosa strain AZPAE14984 AZPAE14984_contig_7, whole genome shotgun sequence

⇒Summary: seq-len = 572855 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 147592-148520 bp Zoom in on locus 1 x16 CRISPR array Location: 147592-148520 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 147592-148520 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 147592-148520 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JTPK01000030.1 Pseudomonas aeruginosa strain AZPAE14984 AZPAE14984_contig_30, whole genome shotgun sequence

⇒Summary: seq-len = 139528 bp; # of CRISPR array = 0; # of cas gene = 4  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 98279-106540 bp Zoom in on locus 1 Gene: mkCas0115:csx3 Type: other Location: 98279-99889 bp Gene: pfam13280:WYL Type: other Location: 100050-101066 bp Gene: COG2378:WYL Type: other Location: 101808-102650 bp Gene: unk Type: unknown Location: 102781-103068 bp Gene: unk Type: unknown Location: 103203-103781 bp Gene: COG1199:DinG Type: Subtype-IV-A Location: 104174-106540 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)