CRISPRone

CRISPRone report for GCA_000792425.1_AZPAE14988

♦ Seq 1: JTPG01000016.1 Pseudomonas aeruginosa strain AZPAE14988 AZPAE14988_contig_16, whole genome shotgun sequence

⇒Summary: seq-len = 352294 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 134725-135053 bp Zoom in on locus 1 x6 CRISPR array Location: 134725-135053 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 134725-135053 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 134725-135053 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JTPG01000018.1 Pseudomonas aeruginosa strain AZPAE14988 AZPAE14988_contig_18, whole genome shotgun sequence

⇒Summary: seq-len = 209936 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 58971-68920 bp Zoom in on locus 1 x16 x8 CRISPR array Location: 58971-59899 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 58971-59899 bp Num of repeats: 16 Spacers: s1-s15 Gene: cd09739:cas6f Type: other Location: 60082-60645 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 60649-61677 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 61688-62671 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 62658-63962 bp Gene: COG1203:cas3 Type: Type-I Location: 64020-67250 bp Gene: cd09718:cas1 Type: universal Location: 67247-68221 bp CRISPR array Location: 68473-68920 bp Num of repeats: 8 Spacers: s16-s22 CRISPR array Location: 68473-68920 bp Num of repeats: 8 Spacers: s16-s22 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 58971-59899 bp]: array | spacers
           [Locus range 68473-68920 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)