CRISPRone

CRISPRone report for GCA_000792445.1_AZPAE14989

♦ Seq 1: JTPF01000001.1 Pseudomonas aeruginosa strain AZPAE14989 AZPAE14989_contig_1, whole genome shotgun sequence

⇒Summary: seq-len = 242119 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 172297-182966 bp Zoom in on locus 1 x21 x15 CRISPR array Location: 172297-173525 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 172297-173525 bp Num of repeats: 21 Spacers: s1-s20 Gene: cd09718:cas1 Type: universal Location: 173776-174750 bp Gene: COG1203:cas3 Type: Type-I Location: 174747-177977 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 178035-179339 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 179326-180309 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 180320-181348 bp Gene: cd09739:cas6f Type: other Location: 181352-181915 bp CRISPR array Location: 182099-182966 bp Num of repeats: 15 Spacers: s21-s34 CRISPR array Location: 182099-182966 bp Num of repeats: 15 Spacers: s21-s34 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 172297-173525 bp]: array | spacers
           [Locus range 182099-182966 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JTPF01000021.1 Pseudomonas aeruginosa strain AZPAE14989 AZPAE14989_contig_21, whole genome shotgun sequence

⇒Summary: seq-len = 258449 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 511-838 bp Zoom in on locus 1 x6 CRISPR array Location: 511-838 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 511-838 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 511-838 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)