CRISPRone

CRISPRone report for GCA_000792515.1_AZPAE14993

♦ Seq 1: JTPB01000048.1 Pseudomonas aeruginosa strain AZPAE14993 AZPAE14993_contig_48, whole genome shotgun sequence

⇒Summary: seq-len = 83093 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 237-986 bp Zoom in on locus 1 x13 CRISPR array Location: 237-986 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 237-986 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 237-986 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JTPB01000174.1 Pseudomonas aeruginosa strain AZPAE14993 AZPAE14993_contig_185, whole genome shotgun sequence

⇒Summary: seq-len = 10522 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 235-10533 bp Zoom in on locus 1 x10 x14 CRISPR array Location: 235-803 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 235-803 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09718:cas1 Type: universal Location: 1054-2028 bp Gene: COG1203:cas3 Type: Type-I Location: 2025-5255 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 5666-6967 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 6954-7937 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 7948-8976 bp Gene: cd09739:cas6f Type: other Location: 8980-9543 bp CRISPR array Location: 9727-10533 bp Num of repeats: 14 Spacers: s10-s22 CRISPR array Location: 9727-10533 bp Num of repeats: 14 Spacers: s10-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 235-803 bp]: array | spacers
           [Locus range 9727-10533 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)